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ABSTRACT New long Chandra grating observations of the O supergiant ζ Pup show not only a brightening of the X-ray emission line flux of 13 per cent in the 18 yr since Chandra’s first observing cycle, but also clear evidence – at more than 4σ significance – of increased wind absorption signatures in its Doppler-broadened line profiles. We demonstrate this with non-parametric analysis of the profiles as well as Gaussian fitting and then use line-profile model fitting to derive a mass-loss rate of 2.47 ± 0.09 × 10−6$${\mathrm{M_{\odot }~{\mathrm{y}r^{-1}}}}$$, which is a 40 per cent increase over the value obtained from the cycle 1 data. The increase in the individual emission line fluxes is greater for short-wavelength lines than long-wavelength lines, as would be expected if a uniform increase in line emission is accompanied by an increase in the wavelength-dependent absorption by the cold wind in which the shock-heated plasma is embedded.